PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462967834
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 192aa    MW: 21029.2 Da    PI: 6.1426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462967834genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12250455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +h ++Er+RR+++N+ +  Lr+l P +   + k+ + a+i   A+++I++Lq
  462967834  2 SHIAVERNRRRQMNEHLKVLRSLTPAL---YIKRGDQASIIGGAIDFIRELQ 50
               89*************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.932149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-12153No hitNo description
SuperFamilySSF474591.18E-14163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-13252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKV LRSLTPALYI KRGDQASIIG GAIDFIRELQ QVLDPTPSPR  60
SLLTTGSSSS DVSPASVAVK VKELAACCNS PVADVEAKIS GSNVLLRTLS GRVPGQALRM  120
IAVLEALHLE VLHLNISTME DTVLHSFIGL ECQVSVEDLA YEVQQTFACC HQELDQHQDN  180
LIMYPSAMPM AI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269695e-50KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.11e-92PREDICTED: transcription factor MUTE
SwissprotQ9M8K69e-65MUTE_ARATH; Transcription factor MUTE
TrEMBLW5BPW04e-92W5BPW0_WHEAT; Uncharacterized protein
STRINGSi004438m5e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.13e-53bHLH family protein